YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89201860, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	276	0.97
Transmembrane Helix	277	298	0.89
Non-Cytoplasmic	299	312	0.82
Transmembrane Helix	313	331	0.83
Cytoplasmic	332	338	0.65
Transmembrane Helix	339	362	0.88
Non-Cytoplasmic	363	388	0.87
Transmembrane Helix	389	407	0.93
Cytoplasmic	408	416	0.84
Transmembrane Helix	417	439	0.90
Non-Cytoplasmic	440	447	0.73
Transmembrane Helix	448	469	0.88
Cytoplasmic	470	506	0.97
Transmembrane Helix	507	527	0.89
Non-Cytoplasmic	528	539	0.77
Transmembrane Helix	540	561	0.89
Cytoplasmic	562	566	0.79
Transmembrane Helix	567	587	0.88
Non-Cytoplasmic	588	601	0.84
Transmembrane Helix	602	625	0.87
Cytoplasmic	626	633	0.91
Transmembrane Helix	634	657	0.88
Non-Cytoplasmic	658	662	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKVALLGNP NTGKTSLFNA LTGSYEYVGN WSGVTVEKKI GKLKDKQGTL IDLPGVYDLN  60
   61 PVSRDEGVVT HFLLTEEFHY MLNIVDSSQF ERNMHLTLQL LEFGKPMSIG LNMIDVAKQR 120
  121 GIVIDVKRLS EILGVTVVPV VARNGKGCDE LLATLHENNR KEMNSFILSY GEQVETAIAS 180
  181 IMTLFMKENY EHLRWLALQF LSNNEVVEQE VMGLSIYHEL VTIRSQLEKK LDCTLEEHMY 240
  241 NTRATYIEKL KTSVIQHKQE GKIPFSEKID KLIAHKIFGL PIFLAVMFFI FQVTFTWIGT 300
  301 PLSDILDEFF SGQLTDWVTA GLIHIGASDF IQALITEGII AGVGAVLVFV PQIFALFFFI 360
  361 SLLEDSGYMA RIAVVMDRIM EFFGLNGKAF IPMIIGFGCN VPGIMAARTI EQEKERLLTV 420
  421 FVTPFMSCSA RLPVYALFAG VFFPHSQATV VFSLYIAGII LALLVTKIMS MTILKEEKSI 480
  481 FVVELPPYRM PQAKTLWLST WEKGKGFVRK AGTFIFGGSV VIWLLNYAGP SGFGVDMGDS 540
  541 FLAMIGGVVA PLLAPLGFGT WQAAASLLTG FLAKEVVVST MAIIYAVKED ALGNIMGAHY 600
  601 TALSAYAFMF FLLLYVPCLA TVAVIRRETG SIKWTIFSVV YPLIVAYVLT FVIYQVGALL 660
  661 GF