YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89150470, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	9	0.82
Transmembrane Helix	10	30	0.91
Cytoplasmic	31	65	0.80
Transmembrane Helix	66	86	0.79
Non-Cytoplasmic	87	90	0.61
Transmembrane Helix	91	115	0.80
Cytoplasmic	116	135	0.93
Transmembrane Helix	136	159	0.87
Non-Cytoplasmic	160	170	0.85
Transmembrane Helix	171	195	0.86
Cytoplasmic	196	203	0.77
Transmembrane Helix	204	223	0.97
Non-Cytoplasmic	224	233	0.77
Transmembrane Helix	234	256	0.88
Cytoplasmic	257	292	0.92
Transmembrane Helix	293	316	0.87
Non-Cytoplasmic	317	354	0.93
Transmembrane Helix	355	376	0.92
Cytoplasmic	377	392	0.89
Transmembrane Helix	393	409	0.96
Non-Cytoplasmic	410	415	0.66
Transmembrane Helix	416	437	0.85
Cytoplasmic	438	486	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAFVGWLNH IVWSSALVYL CLGAGLYFSI RTRFLQLRHF GEMLKLTFQG EKSEAGVSSF  60
   61 QALALSLSGR VGTGNIAGVA TAIAFGGPGA IFWMWAVAFL GAGSSYIEST LAQIYKTKHK 120
  121 GQFRGGPAYY IEKGLGLKWY ALLFVIATIL ATGLLLPGVQ ANSIALSLET AFGVNTSVSG 180
  181 VILVGIVALI IFGGVKRIVN VAQVVVPFMA VGYILVACAI IVMNIEKLPE AFMLIIKSAF 240
  241 ALESAFGGII GLAISWGVKR GIYSNEAGQG TGPHAAAAAE VSHPAKQGLV QAFAVYIDTL 300
  301 FVCSATAFMM IITGMYNVFD ASGKNFIVNK LNGAQPGPGY TQAAVESVFP GFGNGFVAIS 360
  361 LLFFAFTTVM AYYYIAETNI AYLNRKKDRP WMLMLLKFIF LGVVFYGCVK TAETAWALGD 420
  421 IGVGIMAWVN IIAILCLQKP AILALKDYEK QKKEGKDPVF HPRELGIKNA DFWEHEYGKD 480
  481 KKEEVS