YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89201464, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQLFRYPLH QIPLVAMAII IALSVHEFAH AYVAYKFGDD TAKRQGRLTL SPMSHLDPIG  60
   61 MIAVLILGFG WARPVPVNPY NFKRPRLAGI LVSIAGPISN FLLAAIGLII WYALIRIGVL 120
  121 TAIPFAVADT LGQFFEIFIV LNVVLLVFNL LPIPPLDGYR VMEDLAPANI RAKMTQYEKY 180
  181 GAIALLILVI TPLDRYTIQP IFSVVIPQVL RFLENIIAPI FGLI

Type	Start	End	Confidence
Cytoplasmic	1	8	0.88
Transmembrane Helix	9	30	0.87
Non-Cytoplasmic	31	54	0.87
Transmembrane Helix	55	75	0.88
Cytoplasmic	76	88	0.82
Transmembrane Helix	89	115	0.85
Non-Cytoplasmic	116	133	0.79
Transmembrane Helix	134	153	0.91
Cytoplasmic	154	179	0.86
Transmembrane Helix	180	198	0.48
Non-Cytoplasmic	199	224	0.47