YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89150561, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKDERFKQA EFGAIVGIVG NIVLAIVKAV IGYMGNSKAL LADAVHSASD VVGSLAVFFG  60
   61 LRAAKQPPDE DHPYGHGKAE SISAIIVAVL LFIVGIEIAI SSIKAFTEEL DPPKGIAIFA 120
  121 VILSIVVKEG MFQYKYRLGK RVNSDAIIAN AYEHRSDVFS SITALIGICA AIIGNQIDAS 180
  181 WLVYADPVAG LFVSLFVVKM AWDIGGEAIH TTLDHVLHEE HVIPLREAVL QIEGVKKIGS 240
  241 LYAREHGHYV IVDIKVSVDP YITVEEGHRI GKCVKEVLMK QDNVQNVFVH INPYSPD

Type	Start	End	Confidence
Cytoplasmic	1	11	0.93
Transmembrane Helix	12	32	0.95
Non-Cytoplasmic	33	41	0.78
Transmembrane Helix	42	61	0.91
Cytoplasmic	62	81	0.87
Transmembrane Helix	82	103	0.91
Non-Cytoplasmic	104	114	0.78
Transmembrane Helix	115	132	0.93
Cytoplasmic	133	155	0.88
Transmembrane Helix	156	174	0.88
Non-Cytoplasmic	175	181	0.69
Transmembrane Helix	182	202	0.82
Cytoplasmic	203	297	0.93