YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|152977079, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	4	0.64
Transmembrane Helix	5	26	0.78
Non-Cytoplasmic	27	37	0.50
Transmembrane Helix	38	71	0.78
Cytoplasmic	72	86	0.83
Transmembrane Helix	87	107	0.90
Non-Cytoplasmic	108	113	0.80
Transmembrane Helix	114	135	0.93
Cytoplasmic	136	151	0.90
Transmembrane Helix	152	173	0.89
Non-Cytoplasmic	174	179	0.72
Transmembrane Helix	180	197	0.97
Cytoplasmic	198	204	0.87
Transmembrane Helix	205	225	0.91
Non-Cytoplasmic	226	232	0.76
Transmembrane Helix	233	255	0.90
Cytoplasmic	256	262	0.93
Transmembrane Helix	263	283	0.96
Non-Cytoplasmic	284	285	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIFLAILPA LFWGSIVLFN VKLGGGPYSQ TFGTTLGALI FSIGIYIFVQ PVITPVVIGV  60
   61 GIVSGLFWAL GQANQLKSID LMGVSKTMPI STGMQLVATT LFGVLIFREW STTVSIVLGI 120
  121 LAIICIIVGI VLTSLQSKEE KNEAQAGTFK KGIMILLVST FGYLVYVVVI RLFHVNGWSA 180
  181 LLPQAIGMVI GGILLTFRHK PFNKYAIRNI IPGLIWAAGN MFLFISQPRV GVATSFSLSQ 240
  241 MGIVISTLGG IFILGEKKTK RQFIAIIIGI LFIIGAGIML GIAKG