YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89150747, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	30	0.90
Transmembrane Helix	31	51	0.91
Non-Cytoplasmic	52	72	0.91
Transmembrane Helix	73	93	0.93
Cytoplasmic	94	100	0.76
Transmembrane Helix	101	121	0.90
Non-Cytoplasmic	122	132	0.80
Transmembrane Helix	133	155	0.88
Cytoplasmic	156	174	0.86
Transmembrane Helix	175	195	0.94
Non-Cytoplasmic	196	216	0.79
Transmembrane Helix	217	239	0.87
Cytoplasmic	240	284	0.80
Transmembrane Helix	285	305	0.93
Non-Cytoplasmic	306	334	0.66
Transmembrane Helix	335	365	0.74
Cytoplasmic	366	368	0.47
Transmembrane Helix	369	387	0.63
Non-Cytoplasmic	388	391	0.49
Transmembrane Helix	392	414	0.77
Cytoplasmic	415	435	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKFIAFMEK YIVPVAGRIG SQRHLAAIRD GFIAVMPLIL VGALASLVNG FPSEVFQNFM  60
   61 KDTFGEVWKD VGGGMWTGSF AILALSVAFT TAYNLGKSYN VDGLSAGLIS FCSLIILTPV 120
  121 TPKEGGLNFL WTGTQGLFVA IIVALLVTEV FRFFVQREIT LKMPDGVPPA VIRSFAALVP 180
  181 AFVILTVVSF IALAVKLAGT SVHEFIFHTL QVPLQNLAGS LPSAIIVVLF VHVLWFFGLH 240
  241 GPNIVAGIIE PLYLPALEEN VKLFRDGVSA FDVPNIVTKS FFDTFVYLGG SGATLAFLVV 300
  301 VLIVAKSAQL RGVSRLSIGP GAFNINEPVI FGTPIILNPI LFVPFIVTPI VLVITSYTAI 360
  361 YFGWVPKTVT IIPWATPPVI SGYLVTGGHI SGAILQLFNF VLAMVIYYPF VVLCDRSVVR 420
  421 TEKAAAQGND QSVPM