YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89150839, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	36	0.90
Transmembrane Helix	37	56	0.82
Non-Cytoplasmic	57	64	0.76
Transmembrane Helix	65	87	0.88
Cytoplasmic	88	96	0.86
Transmembrane Helix	97	116	0.96
Non-Cytoplasmic	117	123	0.74
Transmembrane Helix	124	148	0.78
Cytoplasmic	149	167	0.79
Transmembrane Helix	168	190	0.88
Non-Cytoplasmic	191	197	0.86
Transmembrane Helix	198	217	0.94
Cytoplasmic	218	257	0.96
Transmembrane Helix	258	279	0.91
Non-Cytoplasmic	280	292	0.83
Transmembrane Helix	293	313	0.95
Cytoplasmic	314	323	0.87
Transmembrane Helix	324	343	0.94
Non-Cytoplasmic	344	347	0.80
Transmembrane Helix	348	369	0.88
Cytoplasmic	370	387	0.77
Transmembrane Helix	388	409	0.90
Non-Cytoplasmic	410	416	0.83
Transmembrane Helix	417	439	0.91
Cytoplasmic	440	482	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQRHNLDFG PQDVNIINPK QAKKAVVATG IGNMMEWFDF GLYAYLAVIL SQLFFSNVHN  60
   61 SSLQLVLTFG TFAAAFLVRP IGGIFFGRIG DKYGRKVVLS TTIILMALST LFIALLPTYE 120
  121 QIGIWAPIFL LVARIVQGFS TGGEYSGAMV YIAESSPDKK RGILGSGLEI GTLSGYIAAS 180
  181 GIVTILTVLL TNEQMLSWGW RIPFLIAAPI GLVGLYLRRH LSESPVFQEM EKEKAQEEYK 240
  241 DDKQIPLIYI LKYYKKDFLL SIVIVAFFNI TNYMILSFIP SYLTQIVKMK ETTGLIIISI 300
  301 TMTLMIPLAF YFGKLSDKVG NKRVVQFGLL GLTLCSIPAF LLIRHGHIVA IFAGIFVLGF 360
  361 FLSIYEGTLP SLLPSLFFTD VRYRALSISF NISVSIFGGT TPLVSSYLVH ITDNALAPAF 420
  421 YLTGVSLIGL IVFSLLFVTT SGRALKGAYP TVETKKEAYE VAKQVPEEAL WWHEEALEVK 480
  481 KS