YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|152023555, gi...
Protein type:	Transmembrane
Type Confidence:	0.64
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFVWKIMSN VISFVLFALM VFLAFVVISS KASGGEPTIM GYQFKTVLSG SMEPTFLTGS  60
   61 VIAIEPTKDG SKYQKGDVIT FKESDTKIVT HRIIDVQNAN GKVMYVTKGD NNNGPDMKPV 120
  121 LAENVIGKYE DITVPYVGYL LNYANSKAGA ALLLIIPGLF LLGYSVFSIS SAIRSIDKEK 180
  181 KNKSADVGQS V

Type	Start	End	Confidence
Cytoplasmic	1	9	0.55
Transmembrane Helix	10	30	0.59
Non-Cytoplasmic	31	147	0.94
Transmembrane Helix	148	171	0.79
Cytoplasmic	172	191	0.83