YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|152974813, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKFLVSYSW LILLFLYFPM MVLMVYSFND SRINAEWQGF TFHWYTDLFQ KQDVIDALVN  60
   61 SITIALITTF VTTALGVFFA VALHRYKYRF EGAINGLVYL PILIPDILMG LSLLILFSQI 120
  121 GMELGQATII IAHITFSISF VVVILAARLS SMGHDLEEAA NDLGATPWQT FRHVTLPSIA 180
  181 PGIISAALLT FTLSIDDFVI SFFVSGPGST TLPLYIYSMV KRGVSPEINA LSTILIVVIV 240
  241 GLMIASEIFR NKGADGEENS GGHLPL

Type	Start	End	Confidence
Cytoplasmic	1	7	0.90
Transmembrane Helix	8	28	0.93
Non-Cytoplasmic	29	61	0.94
Transmembrane Helix	62	83	0.93
Cytoplasmic	84	95	0.85
Transmembrane Helix	96	117	0.92
Non-Cytoplasmic	118	128	0.73
Transmembrane Helix	129	149	0.94
Cytoplasmic	150	170	0.92
Transmembrane Helix	171	192	0.89
Non-Cytoplasmic	193	197	0.78
Transmembrane Helix	198	219	0.81
Cytoplasmic	220	227	0.79
Transmembrane Helix	228	249	0.88
Non-Cytoplasmic	250	266	0.83