YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|152023578, gi...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTMVQKLWL TVVCAVCITV SFLYFVSLYS YEKLYVQNIK DTLIVEGKKL VSQYNKREGI  60
   61 SAFEEKVRMF DRVSHADILF VNNPRDLSAC LPFDVHYDSL ISEQDRQILL DGKTVTKVGY 120
  121 EEHFNRNIMG VVIPVLEEKK LVGIVYSYIP LKSIKDLIFD MGIILAPLAL IIVILTVWIG 180
  181 RKIIIAITKP LSQMEQIANH MATGDFSERI TISSEDEIGR LGRAFNKMAT SLENEDIKRK 240
  241 EFLANVSHEL RTPLSYIKGY SEAILDGVAK GKQEKFMQLI HKEAGRMQRL VHDLLDLAQL 300
  301 EGEHFPLQKQ PIVFAQLIED VVETYEWKCI EKQVEISMEL DPDIIVMIDE DRMQQVLHNI 360
  361 LDNAIRYTNE KGKITVQLQK LKKDCQLKIM DTGIGIEREH VEQLGERFYR VDKARSRQHG 420
  421 GTGLGLAIVK QIVHIHDGKW KIESEKGKGT TVMIQLQME

Type	Start	End	Confidence
Cytoplasmic	1	7	0.52
Transmembrane Helix	8	28	0.89
Non-Cytoplasmic	29	156	0.59
Transmembrane Helix	157	180	0.85
Cytoplasmic	181	459	0.56