YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89200907, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.83
Transmembrane Helix	16	38	0.92
Non-Cytoplasmic	39	45	0.75
Transmembrane Helix	46	67	0.78
Cytoplasmic	68	74	0.59
Transmembrane Helix	75	99	0.88
Non-Cytoplasmic	100	130	0.67
Transmembrane Helix	131	152	0.90
Cytoplasmic	153	160	0.63
Transmembrane Helix	161	181	0.69
Non-Cytoplasmic	182	193	0.80
Transmembrane Helix	194	213	0.95
Cytoplasmic	214	230	0.88
Transmembrane Helix	231	254	0.90
Non-Cytoplasmic	255	296	0.65
Transmembrane Helix	297	331	0.69
Cytoplasmic	332	350	0.72
Transmembrane Helix	351	374	0.89
Non-Cytoplasmic	375	409	0.52
Transmembrane Helix	410	430	0.91
Cytoplasmic	431	449	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGIKKFLQK LRPVQLIVFF YFIAVIVSVI LLSMPFVIKP GVKWTFIDAL FTSVSAVSVT  60
   61 GLSVVSIPDT FNTVGIIVLA FVLQLGGLGI MALGTFLWIL TGKKIGLQRR RLIMADHNQG 120
  121 NLSGLVELMR SILIVIISIE LVGALLLGTR FLNYFSTWQE AYFHGFFAAI SATTNGGFDL 180
  181 TGQSLIPYQK DYIVQIIHML LIILGAIGFP VLMEIKQYIS KRKHQLFRFS LFTKLTTTTF 240
  241 FALIVVGTIV IILLEQDRFF TGKSWHETLF YALFQSVTTR SGGLATMDIR DLSQPTLLFM 300
  301 SVLMFIGASP SSVGGGIRTT TFAVNILSLY SFAKGGRTVR IFKRQLHEED ILKASVVMTM 360
  361 GILLCASALF ILSITETAPL MKLIVEVCSA FGTTGLSTGI TSDLTTVGKC VLIVLMFIGR 420
  421 VGILTFILAS GGREQPPRYK YPKERIIIG