YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89151063, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	27	0.96
Transmembrane Helix	28	49	0.91
Non-Cytoplasmic	50	83	0.94
Transmembrane Helix	84	105	0.94
Cytoplasmic	106	114	0.92
Transmembrane Helix	115	139	0.85
Non-Cytoplasmic	140	165	0.87
Transmembrane Helix	166	186	0.85
Cytoplasmic	187	207	0.87
Transmembrane Helix	208	232	0.80
Non-Cytoplasmic	233	262	0.91
Transmembrane Helix	263	282	0.92
Cytoplasmic	283	311	0.93
Transmembrane Helix	312	336	0.90
Non-Cytoplasmic	337	366	0.93
Transmembrane Helix	367	389	0.93
Cytoplasmic	390	400	0.96
Transmembrane Helix	401	425	0.91
Non-Cytoplasmic	426	443	0.93
Transmembrane Helix	444	466	0.89
Cytoplasmic	467	508	0.83
Transmembrane Helix	509	529	0.75
Non-Cytoplasmic	530	546	0.93
Transmembrane Helix	547	568	0.94
Cytoplasmic	569	585	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDMLENHKIE ISEKKVKRSI GKEEGLQRLL IFGVLVAFLI MLVLPLLQLF TQAFYDKDGT  60
   61 FVGVANFSKY FTTPTLIQSL QNTVWISGMT TVISVTLAFM YAYAIARTNV LGKRIFQYIA 120
  121 LLPLFAPTML HGIALTYLFG NQGLVTKGLF GLFEGIQIPL YGPVGITIAE VIYTFPQAFL 180
  181 ILFIAFQGAD YRLHEASNML GASKVKQFFS VTLPGVKYGL VSAMFVVFTL SFTDFGAPKI 240
  241 VGGQYNVLAT DVYKQVIGQQ NMPMGATVGM ILLLPAIFAF MVDRITHRKQ ETFLSSKAVP 300
  301 YRITPNKTRD IISFMYCTVI TLMIILLFVA VGVAASVKVW PYNMTFTLEH FNFSSLTGDG 360
  361 IEAFKNSVIV SCITAVIGAI VTFVFAYIIE KIQQLAFFRK VGYFFSIIPL AIPGLVLGLG 420
  421 YVFFFSQPTL QFLGWEVTNP FHSLYGTIAL LVLVNIIHFY AVTFVTATTA LKKLDREFEL 480
  481 VSQSLSIPFH KMFFKVTVPM CLPAILEMVM YYFVNSMVTV SAVVFLYAAD FKLAAVSIVN 540
  541 MDDAGNVAPA AAMSVLIVVT NIVVRAIYEW GTKAVRRRTS LWQKR