YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|152023645, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKAKFGPML LALALFAVFL LIPTRFLLPL VSDKKVERAA TSLQEEKIQS MILQQKMLED  60
   61 PKYLPMYGSS EFARMDAFHP SNYFKVKPEG FTPFLLGRGG TQNLVHVLNF ASTMDQLKDK 120
  121 KMVFVLSPQW FVPHGIDETH FAPNFSKQQG YHFIFNNDLK PEMKKQIAKR LLNFEIVKKE 180
  181 TLLKTSLEGI VYDDTEHKIK AMAVKPFAYL YRNILDRKDL FTAMFHIKTP KEKLDPALKQ 240
  241 MNWEEARKYA DEAGKMESQS NEYGIEDHYF NKKIKKKLKQ RQGYLKHDAY DQSPEYEDLQ 300
  301 TVLDLLKQTG AKPLFISVPV KGTWYDYAGF PKERRELYYK KVHKQIEKAG YPIADFSNHE 360
  361 YDKYFLKDHM HLGWKGWVYI DEAIQQFYKT N

Type	Start	End	Confidence
Signal Peptide	1	29	0.95
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	391	0.99