YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89200673, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAYEIDDQL LTAEDKKALT ANKEQQMISR KKEVFQKLIS NPIAIIGGVT LLLIVIFSLI  60
   61 GESLTPYSAN EQIKEATNLQ PSSEHWFGTD DLGRDIWART WAGGKISLAV GLIAAALDIG 120
  121 LGVLIGGFSG YVRGRNRLGT LIDEWIVRGI EVMYGIPYLL IVILLLIVMK PGLFTIILSL 180
  181 ALTGWIGMAR LVRAQVLSLK QKEFVIAAER LGTSHMKIIY KHLIPNLTGI IIVNLSFTIP 240
  241 AAIFSESFLS FIGLGVQSPA ASWGTMTNDA LGTLLSGEWW QLFFPAIMIA LIMFAFNAIG 300
  301 DGLQDAIDPK IVKQNRKGKK HGAALIFRKR NVSR

Type	Start	End	Confidence
Cytoplasmic	1	37	0.99
Transmembrane Helix	38	60	0.93
Non-Cytoplasmic	61	105	0.98
Transmembrane Helix	106	132	0.85
Cytoplasmic	133	144	0.96
Transmembrane Helix	145	167	0.88
Non-Cytoplasmic	168	172	0.76
Transmembrane Helix	173	192	0.93
Cytoplasmic	193	222	0.92
Transmembrane Helix	223	244	0.86
Non-Cytoplasmic	245	279	0.77
Transmembrane Helix	280	300	0.91
Cytoplasmic	301	334	0.83