YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89151430, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKDVQKLSP DLFQPANQSN VDNEVIARPS LTFWQDVRKR LFQHKGAMFG LVLLVIITLL  60
   61 AIFGPMVSKY SYKDQDLSRA KLPPKIPVLE NIHWLPFDGT DQYGVDQYKK RDIKESFWFG 120
  121 TDDLGRDLWT RTWDGTRVSL YIALLAAAID LIIGVAYGGI SAFYGGRVDN IMQRVMEIIN 180
  181 GIPYLIIVIL MVIIMGSGIW SITLAMAITG WIGMSRIVRG QVLKLKNQEY VLASRTLGAT 240
  241 NTQLIIKHLI PNVMGPIIVM TMFTIPTAVF GEAFLSFIGL GIQPPFASLG SLVNDGYKSI 300
  301 QTYPHMMFIP AIVISMLILA FNLMADGLRD ALDPKMRK

Type	Start	End	Confidence
Cytoplasmic	1	45	0.72
Transmembrane Helix	46	67	0.88
Non-Cytoplasmic	68	138	0.72
Transmembrane Helix	139	164	0.86
Cytoplasmic	165	177	0.61
Transmembrane Helix	178	197	0.80
Non-Cytoplasmic	198	198	0.28
Transmembrane Helix	199	218	0.65
Cytoplasmic	219	252	0.63
Transmembrane Helix	253	282	0.74
Non-Cytoplasmic	283	305	0.73
Transmembrane Helix	306	325	0.94
Cytoplasmic	326	338	0.82