YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89200595, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNTLKLLFF FVGLFIAFVS LRMVIDVAFY SDVIGIRNIS FLGITSILFT ISAFLIGCVI  60
   61 FLENRHPSKT LTWLIVLGIF PVIGFFAYLL FGQNFRRKRM FQKKALLDEQ AFLQYKGHED 120
  121 YRERILQKHK HQELLFRLAD RLGALNISFQ TETKVLTNGE ETFQAILQGL QKAKHHIHME 180
  181 YYIVRDDKLG TKIKDILIQK VKEGVVVRFL YDAVGSFKLS NAYIEELNKA GVEMIPFFPV 240
  241 RFPILNDKIN YRNHRKIVVI DGNEGFVGGL NIGDEYLGEN KYFGFWRDTH LYLRGEAVQS 300
  301 LQLIFLQDWF YMTGEAVLAP EYLQAQSVEG DHWGGVQLVA GGPDNKWETI KHLYFAMIAS 360
  361 ARKSIWIATP YFIPDDDILS ALKVAALAGI DVRLLMPSKP DKRTVFYASR SYFPELLDAG 420
  421 VKIYEYEKGF LHSKVVIVDS DLASIGTANM DMRSFHLNFE VNAFLYDTGS IRKLVQDFEE 480
  481 DLQVSSEIHG DHFHKRRLHK RIVESTYRLL SPLL

Type	Start	End	Confidence
Cytoplasmic	1	6	0.96
Transmembrane Helix	7	29	0.90
Non-Cytoplasmic	30	38	0.87
Transmembrane Helix	39	62	0.91
Cytoplasmic	63	70	0.90
Transmembrane Helix	71	92	0.95
Non-Cytoplasmic	93	514	0.99