YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|152023214, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDREKKQEYA LLTAWGASFI ATLGSLYFSE IMKFEPCVLC WYQRIFMYPF VLWLGIAIAK  60
   61 KDYRIASYSL PIASIGACIS LYHYGIQKIP AFSEAGAVCG RVPCTGEYIN WFGFITIPFL 120
  121 ALIGFMTIII CSFIIIKNK

Type	Start	End	Confidence
Cytoplasmic	1	8	0.98
Transmembrane Helix	9	29	0.93
Non-Cytoplasmic	30	39	0.78
Transmembrane Helix	40	58	0.93
Cytoplasmic	59	64	0.88
Transmembrane Helix	65	86	0.91
Non-Cytoplasmic	87	114	0.93
Transmembrane Helix	115	136	0.94
Cytoplasmic	137	139	0.92