YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|152023225, gi...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQNPSLQEN TRSNTKKKGK KKTKIIISAL LLFLIIGGGY TWFLVNKASS AVRNAAHDLA  60
   61 RGNKSDLRDK AVKPITNNVS VLIMGVDESD VRGKEYGNAI RTDALLLATF NKDSKTVKLL 120
  121 SIPRDTYTYI PVEKKKDKIT HAHAYGSAKN GKNGGPQASI DAVEKLLHVP VDYFVKFNFK 180
  181 SFMKIVDDLG GIKVDVPVEF TEQDSNDNPD AIHLKKGVQK LNSEEALALA RTRHIDSDAM 240
  241 RGQRQQLVIE AILKKLTSVG SVTKVGNIID DINGQFVTNL TFDDMLSFYK YGSDSTLEKL 300
  301 QIEGTDCYMA KGDDTCSKSA GGGRIYYYKP DEKNLKSLTN ELREHLGLPA YTKKESDKKK 360
  361 QSNPEAEENQ DSNHNENEED TETESHNN

Type	Start	End	Confidence
Cytoplasmic	1	24	0.94
Transmembrane Helix	25	44	0.95
Non-Cytoplasmic	45	388	0.99