YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89151560, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.74
Transmembrane Helix	8	27	0.92
Cytoplasmic	28	44	0.74
Transmembrane Helix	45	66	0.80
Non-Cytoplasmic	67	70	0.54
Transmembrane Helix	71	105	0.64
Cytoplasmic	106	108	0.47
Transmembrane Helix	109	127	0.82
Non-Cytoplasmic	128	134	0.77
Transmembrane Helix	135	156	0.89
Cytoplasmic	157	176	0.82
Transmembrane Helix	177	199	0.87
Non-Cytoplasmic	200	216	0.83
Transmembrane Helix	217	238	0.85
Cytoplasmic	239	246	0.72
Transmembrane Helix	247	269	0.89
Non-Cytoplasmic	270	287	0.87
Transmembrane Helix	288	310	0.70
Cytoplasmic	311	551	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFNIQDMLF QFIGGLGIFL FGIKYMGDGL QQAAGDRLRD ILDRFTTNPL MGVLAGMLVT  60
   61 VLIQSSSGTT ALTVGLVSAG FMTLRQAIGV IMGANIGTTV TAFIIGIKIG EYALPIMAIG 120
  121 AIFLFFFKNK KVQSLGQVVF GFGMLFFGLE LMSTGMKPLR SLESFQELTV SMSNNPILGV 180
  181 IVGTVFTLIV QSSSATIGIL QELFGQGAID LKAALPVLFG DNIGTTITAV LAAIGTSIAA 240
  241 RRAAFVHVIF NIVGTIIFTI LLIPFTSLIQ YFQTSLNLNP EMTIAFAHGT FNVTNTIIQF 300
  301 PFIAVLAWIV TKIIRGDDAA IDCKPQHLNP IFIEQSPAIA LTEAQKETIR MAEFALHGLK 360
  361 EARCFLNTKE KKHADMAAQL EGAINNLDRK ITDYLVLLSE KPLSPIDSEK HSALSSVVGD 420
  421 IERIGDHVEN LIELVDSQIS NRITLSTEAM EELNEMLELT VSTLQDAIHA LTNFDTELAQ 480
  481 TVITKERKID QMERVLRKRH VMRLNERSCS GDASIIFVDM VSNLERIGDH AVNIADGVLG 540
  541 EQGKFSLRQT L