YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89151494, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.45
Transmembrane Helix	8	29	0.87
Cytoplasmic	30	46	0.33
Transmembrane Helix	47	69	0.77
Non-Cytoplasmic	70	75	0.40
Transmembrane Helix	76	95	0.91
Cytoplasmic	96	104	0.49
Transmembrane Helix	105	126	0.88
Non-Cytoplasmic	127	144	0.52
Transmembrane Helix	145	165	0.73
Cytoplasmic	166	184	0.65
Transmembrane Helix	185	203	0.91
Non-Cytoplasmic	204	236	0.60
Transmembrane Helix	237	259	0.62
Cytoplasmic	260	305	0.81
Transmembrane Helix	306	328	0.86
Non-Cytoplasmic	329	351	0.83
Transmembrane Helix	352	370	0.95
Cytoplasmic	371	383	0.72
Transmembrane Helix	384	403	0.87
Non-Cytoplasmic	404	427	0.85
Transmembrane Helix	428	447	0.89
Cytoplasmic	448	455	0.91
Transmembrane Helix	456	477	0.91
Non-Cytoplasmic	478	485	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFNSFEFIF LFLPIAFLLY FLLNRFGYVT LAKVWLVLAS LFFYSYWNVK YLPLMLVSLI  60
   61 VNYFIGMHLV QHRSKVLLTV GLLFNIGMLS YFKYYDFFLE NVNELFGTHF ALLSLTLPLA 120
  121 ISFYTFQKIA FLVDTYHGET EACHFLDYAL FITFFPQLIA GPIVHHAQIM PQFMDREKKR 180
  181 WQSKYIVLGI FVFAIGIFKK VGIADVLSPL VREGFDVQPS LTFVEAWLSS LAFTFQLYFD 240
  241 FSGYSDMAIG IALLFNITLP QNFNSPYKAV NIQDFWHRWH MTLSQFLTKY VYISLGGNRK 300
  301 GVTRTYVNIM IVFLISGLWH GAGWTFIFWG FLHGAASVIH RLWRKMGGCM PPWAGWLITF 360
  361 LFINITWVFF RATSWHDAIK VLKGMIGLNG FELANSVFPA FILQKMQFLA QYSISFTESY 420
  421 QVSQLDRTMV VYILGALCIS FFLKNSIQLR DTFRPHIWNA VFTAILLVYS VLHLTSISEF 480
  481 LYFNF