YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89200134, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLKNVFFSI LCIFAFGLTA CSSNTNGKGE GSGKLKVVTT YSIIYDMVKQ IGGDKVEIHS  60
   61 LVPIGADPHE YDPLPKDVMR MKDADVVFYN GLNLEEGNSW FEKLLKTTGK SGKDASVYKV 120
  121 SKGVEPIYLE TKGLEKETDP HAWMNIENGI IYAKNVKEAL MKEDPKNKEF YAKNAKEYIA 180
  181 ELQKLHEETV RKIQQLPEEK RYLISSEGAF KYFGKAYGMQ TGYIWEINSE NQGTPDQIRD 240
  241 VVNLIQEKKI PALFVETSVD SRSMETVSKE TNVPIAGKIF TDSLGKPGKD GDTYLKMMKW 300
  301 NTDTIINGLQ K

Type	Start	End	Confidence
Signal Peptide	1	23	0.98
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	311	0.99