YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89200126, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.50
Transmembrane Helix	14	34	0.92
Non-Cytoplasmic	35	87	0.51
Transmembrane Helix	88	122	0.68
Cytoplasmic	123	149	0.87
Transmembrane Helix	150	170	0.93
Non-Cytoplasmic	171	186	0.89
Transmembrane Helix	187	206	0.93
Cytoplasmic	207	215	0.79
Transmembrane Helix	216	237	0.90
Non-Cytoplasmic	238	246	0.83
Transmembrane Helix	247	269	0.86
Cytoplasmic	270	303	0.91
Transmembrane Helix	304	324	0.89
Non-Cytoplasmic	325	348	0.84
Transmembrane Helix	349	372	0.88
Cytoplasmic	373	386	0.95
Transmembrane Helix	387	409	0.93
Non-Cytoplasmic	410	415	0.82
Transmembrane Helix	416	437	0.93
Cytoplasmic	438	480	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMLARLITD INNVLWTYIM IGMLISIGIY FSLRVNFVQI RYFGEMIRLL GDGASSKTRK  60
   61 AQKEKNGVSS FQAFCMSTAS RVGTGNLAGV AIAISTGGPG AVFWMWLIAI IGGASAFVES 120
  121 TLAQIYKVKD GNTFRGGPAY YMEKGLNKRW LGAIFSILIT VSFGLIFNAV QSNTVAAAFD 180
  181 GAFHTDSRLV GIVMAGLLAI IIFGGVKRIA RAVEMIVPVM ALIYIGVALF VVITNITEIP 240
  241 TLFKEIILHA FGIKEVVGGG FGAAILLGVK RGLFSNEAGM GSAPNAAATA NVTHPVKQGF 300
  301 IQTLGVFTDT LLICSCTAFI ILLSDVSGLA NTNGIQLTQQ ALSQHIGSWA SIFVAVAIFL 360
  361 FAFSSLVGNY YYGETNIEFL NGSKGILIVY RIAVLGMVIL GSVATIQIVW DLADLFMGIM 420
  421 AVINLVAIVF LSKFAFTALS DYVKQKKQGR DPVFHASSIP GLENTECWED SKVEEKEQTM 480
  481