YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89200123, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKQIVILGA GYGGLLAALN VRKYYSKSEA QVTVINQYPT HQIITELHRL AAGNISEQAI  60
   61 AMPLTKLFKG KDIDLKIATV ESFSVDKKEV KLVGGTTLSY DALVVALGSK TAYFGIPGLE 120
  121 ENSMVLKSAD DANKIFKHVE ERIREYAKTK NEADATILIG GGGLTGVELV GELADVMPKL 180
  181 AKSYGVNPKE VKLLLVEAGP KILPVLPDDL IERATTSLEA RGVTFLTGLP VTNVEGNTIE 240
  241 LKDGQKIVAN TFVWTGGVQG NPLIGESGLE VNRGRATVDD YLQSTSHKNV FVAGDSAVVF 300
  301 GPEGRPYPPT AQIAWQMGEL IGYNLYAALE GKALEEFKPV NSGTLASLGR KDAVAIIGAS 360
  361 STPLKGLPAS LMKEASNVRY LSHIKGLFSL AY

Type	Start	End	Confidence
Signal Peptide	1	17	0.76
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	392	0.99