YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|152974187, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.98
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRRKIVVAL GGNAIQSGNA TAEAQQKALE RTAEQLVKIM GNNIDIVIAH GNGPQVGNIL  60
   61 LQQKVAETEK TPAMPLDTCG AMSQGMIGYW MENAIEKALK KQNIKKEVAT VITRVIVDEK 120
  121 DEAFQNPTKP IGPFYTEEEA RHLMKETKAV FKEDAGRGWR RVVPSPKPVS IHEHKVINSL 180
  181 VEAGNIVIAV GGGGIPVIES EEGLRGTEAV IDKDFAAQKL AELVGADTLI ILTAVDYVYI 240
  241 NYNQPNQKRL ESIGVDELKK YIEEQQFAPG SMLPKIEAAI HFVNAGPGRK TIITSLDKIY 300
  301 EALEEKAGTI ISQQEACVCV R

Type	Start	End	Confidence
Signal Peptide	1	24	0.94
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	321	0.99