YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89152072, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENYFLFIIM SICLIILPGP DTAMATKNTL TSGKIGGVKT VFGTCIALFI HTLAAVIGLS  60
   61 AIIVKSAFLF SIFKYGGALY LVYLGIKALL SLKDKNNIDV NEHSIHHANK NSSCFRQGFL 120
  121 TNLLNPKVAV FFLTFLPQFL NPNYNTLVQL FIMALTYLVL TVIWFSFYIF LIDKISTFMK 180
  181 KPTTQKYVQG LTGIVLIGFG IKLAFEKSN

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.74
Transmembrane Helix	5	25	0.85
Cytoplasmic	26	39	0.67
Transmembrane Helix	40	63	0.85
Non-Cytoplasmic	64	66	0.53
Transmembrane Helix	67	86	0.71
Cytoplasmic	87	118	0.79
Transmembrane Helix	119	140	0.74
Non-Cytoplasmic	141	149	0.77
Transmembrane Helix	150	172	0.91
Cytoplasmic	173	186	0.89
Transmembrane Helix	187	205	0.79
Non-Cytoplasmic	206	209	0.74