YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89084144, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.93
Transmembrane Helix	20	42	0.84
Non-Cytoplasmic	43	57	0.76
Transmembrane Helix	58	77	0.93
Cytoplasmic	78	88	0.91
Transmembrane Helix	89	111	0.91
Non-Cytoplasmic	112	116	0.87
Transmembrane Helix	117	139	0.90
Cytoplasmic	140	147	0.82
Transmembrane Helix	148	167	0.92
Non-Cytoplasmic	168	179	0.80
Transmembrane Helix	180	196	0.97
Cytoplasmic	197	206	0.70
Transmembrane Helix	207	226	0.93
Non-Cytoplasmic	227	234	0.89
Transmembrane Helix	235	256	0.92
Cytoplasmic	257	264	0.80
Transmembrane Helix	265	287	0.91
Non-Cytoplasmic	288	292	0.89
Transmembrane Helix	293	312	0.94
Cytoplasmic	313	333	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYEIIIKTQR ENVKINSITI EGAAPMPALY VCLMLLTSLL WGGNFVVGKS LVEHASPVAL  60
   61 TAFRWIIAVI FLLPIVLRKE KKLLPPAKSL VPLILMGITG VVLFNIFQFW ALEETTATNV 120
  121 GLISTLNAIS IAVFSAIFLK DRINLPQILT MMFSLFGVLL VLTKGHLEML LSLTFNKGDL 180
  181 WMLAAVCIWG IYSILGKWAG KYTSPILSTF YSGIFGLAIL LPFSYSDLQI KNPDLSFAGS 240
  241 MLYTGLISTV VCMVLWNKGV QKIGAVTAGV FLNFNPVFTA ILAFLLLGEK LEAIQFLGGM 300
  301 IVILGCYLFT RLQAQRQRKS LRGKPEASLT AID