YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89100789, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTNKDRFKQ AEFAAMIGIV GNIVLAILKY GVGVYANSRA LIADAVHSAS DIAGSFAVYI  60
   61 GLRAAKQPPD EDHPYGHGKA ESIAAIIVAV LLMLVGFEIG KSSFEAFFHP IEPPKAIAIA 120
  121 AVLISIVVKE AMFRYKYKLG KKLNSDALII NAYEHRSDVY SSIAALAGIG AAVIGGKAGI 180
  181 GWLEYGDPVA GLLVSLLVIK MAWSLGKESI HNTLDHVLHD EDTEELRKAV LSVPAVKEIN 240
  241 QLHAREHGHY VIIDLKIAVD PHMTVEEGHR VGKEVKEKLM QEKNVHNVFV HINPYNPGNP 300
  301 D

Type	Start	End	Confidence
Cytoplasmic	1	12	0.90
Transmembrane Helix	13	33	0.92
Non-Cytoplasmic	34	40	0.83
Transmembrane Helix	41	62	0.86
Cytoplasmic	63	81	0.82
Transmembrane Helix	82	100	0.91
Non-Cytoplasmic	101	115	0.77
Transmembrane Helix	116	133	0.92
Cytoplasmic	134	158	0.91
Transmembrane Helix	159	180	0.86
Non-Cytoplasmic	181	187	0.64
Transmembrane Helix	188	204	0.88
Cytoplasmic	205	301	0.95