YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89100537, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKPKIVILG AGYGGLMVAT RLQKQVGVNE AEIVLVNKND YHYETTWLHE ASAGTLHHDR  60
   61 VRYDVKNVID RNKIEFVQGT AVEIKTEEKK VILEEGEVTY DYLVVSLGAE PETFGIKGLD 120
  121 VHAFSIINVN AARQIREHIE YQFATYNTEE EKKDERLTIV VGGAGFTGIE FLGELANRVP 180
  181 ELCKEYDVDY SKVKIICVEA APTVLPGFDP ELVNYAVSHL EKKGVQFLIG TAIKECNEDG 240
  241 ITVGKGDEEV EHIKAGTVVW AAGVRGNSII ENSGIEAMRG RVKVQPDLRV PGHEDLFIIG 300
  301 DCSLIINEEI NRPYPPTAQI AMQQGEVCAR NIVALIRNKG ELETFTPDIK GTVCSLGEDD 360
  361 AIGVAFGKKL VGSKASFMKK MIDNRALFMI GGPGLVLKKG KFNIF

Type	Start	End	Confidence
Signal Peptide	1	22	0.65
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	405	0.99