YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89100173, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQSIQGSNT TKGGKKPMEL STEKNVHPSA VQAEEKVESP WLEAWRSFRK NKLAVVGALI  60
   61 VLFFVILAVF APLIAPTGIN EQQLANRLKA PSADHWFGTD DFGRDILSRV IYGARISLWV 120
  121 GFLAVLGSLA AGCLLGILAG YYGRWVDTII SRFFDIMLAF PSILLAIAIV AVLGPSLRNA 180
  181 LIAIAIINIP NFGRLIRSRV LSVKQEEYIM AAKAVGMSDA RILFLHVLPN SMGPIIVQGT 240
  241 LAVATAIIEA AALGFLGLGA EAPNPEWGKM LSDAKAYLIQ APWTMIFPGL AIMLTVLGFN 300
  301 LMGDGLRDAL DPRMKS

Type	Start	End	Confidence
Cytoplasmic	1	52	0.99
Transmembrane Helix	53	75	0.93
Non-Cytoplasmic	76	117	0.96
Transmembrane Helix	118	142	0.89
Cytoplasmic	143	152	0.81
Transmembrane Helix	153	173	0.92
Non-Cytoplasmic	174	179	0.69
Transmembrane Helix	180	196	0.82
Cytoplasmic	197	234	0.61
Transmembrane Helix	235	260	0.80
Non-Cytoplasmic	261	278	0.60
Transmembrane Helix	279	303	0.83
Cytoplasmic	304	316	0.59