YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89099606, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.94
Transmembrane Helix	6	28	0.95
Cytoplasmic	29	48	0.96
Transmembrane Helix	49	70	0.93
Non-Cytoplasmic	71	78	0.80
Transmembrane Helix	79	101	0.87
Cytoplasmic	102	116	0.88
Transmembrane Helix	117	132	0.96
Non-Cytoplasmic	133	150	0.79
Transmembrane Helix	151	170	0.88
Cytoplasmic	171	175	0.79
Transmembrane Helix	176	196	0.91
Non-Cytoplasmic	197	202	0.81
Transmembrane Helix	203	221	0.95
Cytoplasmic	222	227	0.78
Transmembrane Helix	228	247	0.91
Non-Cytoplasmic	248	252	0.74
Transmembrane Helix	253	275	0.91
Cytoplasmic	276	299	0.87
Transmembrane Helix	300	320	0.91
Non-Cytoplasmic	321	324	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMEQAIFLTI LMGFLITVLL SPIFIPFLRR LKFGQSIREE GPQSHQKKTG TPTMGGIMIL  60
   61 LSVTVTTLVM SSKFAEPTAE IYMVLLVTLG FGLLGFLDDF IKVALKRNLG LTSKQKLLGQ 120
  121 IIISLIFYFI FQTNEFSTEV SIPFTDLSID LGWSYALFII FWLVGFSNAV NLTDGLDGLV 180
  181 SGTAAIAFGA FAVLAWNQSQ FEVSIFSVAV VGAVLGFLVF NAHPAKVFMG DTGSLALGGA 240
  241 IATVAILTKL EFILIIIGGV FVIETLSVIL QVISFKTTGK RIFKMSPLHH HYELVGWSEW 300
  301 RVVVTFWTVG LLFAILGIYI EVWL