YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89086740, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	31	0.97
Transmembrane Helix	32	53	0.94
Non-Cytoplasmic	54	71	0.93
Transmembrane Helix	72	93	0.92
Cytoplasmic	94	100	0.80
Transmembrane Helix	101	122	0.89
Non-Cytoplasmic	123	142	0.81
Transmembrane Helix	143	166	0.82
Cytoplasmic	167	185	0.87
Transmembrane Helix	186	205	0.94
Non-Cytoplasmic	206	222	0.90
Transmembrane Helix	223	244	0.88
Cytoplasmic	245	250	0.65
Transmembrane Helix	251	270	0.90
Non-Cytoplasmic	271	293	0.87
Transmembrane Helix	294	313	0.97
Cytoplasmic	314	322	0.88
Transmembrane Helix	323	345	0.60
Non-Cytoplasmic	346	349	0.47
Transmembrane Helix	350	370	0.85
Cytoplasmic	371	378	0.42
Transmembrane Helix	379	398	0.64
Non-Cytoplasmic	399	402	0.56
Transmembrane Helix	403	422	0.86
Cytoplasmic	423	449	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKMNDFLEN KVMPVAGRVA GQRHLQALRD GIILTMPLII VGSLFLILGF LPIPGYDDFM  60
   61 ANTFGDQWLT KLMYPVGATF DIMALIAAFG IAYRLAEKYG VDALSAGAIS VAAFLLATPY 120
  121 QVSFTPDGAS EAVLVGGAIP AALMGSKGLF VAMLIAMLST EIYRFIIQKN IIIKMPDGVP 180
  181 PAVSKSFVAL IPGFIVITVI WVLRLLVEQT DFQSLHNIIG EVLGKPLGIL GGSLIGSLVA 240
  241 VFLVQLLWSC GLHGASIVGG VMGPIWLSAM DANRLAFQGG ETLPNIFTQQ FFDIFVYIGG 300
  301 SGATLALVLA MILRARSKQM KQLGRLAIGP GLFNINEPVV FGMPIVMNPI LIVPFVLTPL 360
  361 VMVLTTYIGM STGLVAKPAG IAVPWTMPPI IGGYLAAGGK MSGAVLQLIN FALAFTIYYP 420
  421 FFRIWDKQKL VEEGGFQPPV DANKKVASM