YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89087265, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQLSKDKFR VVGTQTTDAE KISKPSLSFW KDVTLRFRKN KLAMFGIVLL AILVFMAIFG  60
   61 PYMTPYDYAS NDLGNKNQSP SSEHWFGTDD LGRDVFARTW EGARISLFIG LAAALIDLFI 120
  121 GVLWGGIAGF KGGRTDEYMM RAADVLYGIP YLLLVILLMV VLGQSVGTMI LAMTITGWIN 180
  181 MSRIVRGQVL SLKNQEYVLA SRTLGANVSR IMFKHLIPNT MGPILVTMTL TVPSAIFTEA 240
  241 FLSYLGLGLT PPVASWGTMA NDGLPALRYY PWRLFFPATF ICLTIFAFNV IGDGLRDALD 300
  301 PRLRK

Type	Start	End	Confidence
Cytoplasmic	1	41	0.98
Transmembrane Helix	42	63	0.91
Non-Cytoplasmic	64	104	0.96
Transmembrane Helix	105	128	0.90
Cytoplasmic	129	144	0.82
Transmembrane Helix	145	163	0.86
Non-Cytoplasmic	164	165	0.38
Transmembrane Helix	166	185	0.60
Cytoplasmic	186	215	0.45
Transmembrane Helix	216	248	0.69
Non-Cytoplasmic	249	273	0.59
Transmembrane Helix	274	292	0.95
Cytoplasmic	293	305	0.70