YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89087264, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKYIGKRLI YMIVSLWLII TATFFFMRIA PGNPFTSEKQ LPPEIEANLN AHYGLDQPWY  60
   61 VQYGEYLLRI IKWDFGPSFK YKSQTVNDLI SEGFPVSLML GIEAILIAVS IGVVLGVIAA 120
  121 LKHNKWQDYT AMIVAVMGIS VPSFIMATFL QYFLAIKLGV FPVARWESFM HTILPALALA 180
  181 ASPMAFIARL TRSSMLEVLS NDYIKTAKSK GLSQGVITIK HTIRNAMLPV VSYMGPLSAG 240
  241 IITGSFVIEK IFGIPGLGSH FVLSIGNRDY TVIMGVTVFY SIILLVSILL VDIAYGLIDP 300
  301 RIKLAGGKKG E

Type	Start	End	Confidence
Cytoplasmic	1	8	0.96
Transmembrane Helix	9	30	0.91
Non-Cytoplasmic	31	98	0.98
Transmembrane Helix	99	121	0.91
Cytoplasmic	122	129	0.89
Transmembrane Helix	130	153	0.89
Non-Cytoplasmic	154	168	0.89
Transmembrane Helix	169	190	0.90
Cytoplasmic	191	229	0.95
Transmembrane Helix	230	252	0.86
Non-Cytoplasmic	253	272	0.87
Transmembrane Helix	273	296	0.88
Cytoplasmic	297	311	0.92