YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89087553, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKPKQDPRE NLLFLSWAAS ILAMFGSLYF SEVRHYEPCA LCWYQRIAMY PLAVILGIAV  60
   61 IKKDFKISFY TMILSAAGAC ISIYHYSIQK VSFLGENALS CGRVPCTGQY INWLGFITIP 120
  121 LLALTAFIII FITSLIIWKK TKEAV

Type	Start	End	Confidence
Cytoplasmic	1	11	0.95
Transmembrane Helix	12	31	0.95
Non-Cytoplasmic	32	41	0.83
Transmembrane Helix	42	61	0.93
Cytoplasmic	62	67	0.89
Transmembrane Helix	68	88	0.94
Non-Cytoplasmic	89	115	0.94
Transmembrane Helix	116	138	0.92
Cytoplasmic	139	145	0.97