YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89087528, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.60
Transmembrane Helix	15	36	0.87
Non-Cytoplasmic	37	44	0.47
Transmembrane Helix	45	64	0.88
Cytoplasmic	65	68	0.46
Transmembrane Helix	69	87	0.62
Non-Cytoplasmic	88	94	0.73
Transmembrane Helix	95	116	0.91
Cytoplasmic	117	129	0.91
Transmembrane Helix	130	150	0.91
Non-Cytoplasmic	151	163	0.83
Transmembrane Helix	164	185	0.85
Cytoplasmic	186	190	0.65
Transmembrane Helix	191	210	0.87
Non-Cytoplasmic	211	240	0.84
Transmembrane Helix	241	263	0.90
Cytoplasmic	264	280	0.91
Transmembrane Helix	281	303	0.87
Non-Cytoplasmic	304	315	0.74
Transmembrane Helix	316	336	0.88
Cytoplasmic	337	342	0.66
Transmembrane Helix	343	365	0.87
Non-Cytoplasmic	366	375	0.83
Transmembrane Helix	376	400	0.89
Cytoplasmic	401	412	0.82
Transmembrane Helix	413	431	0.91
Non-Cytoplasmic	432	433	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKLKDYQTN VKTEVLAGIT TFLTMVYIVV VNPVILSDAG VPFEQVFTAT IIAAVAGTLW  60
   61 MALFANYPIA IAPGMGLNAY FAYSVVGTHG NIDYMTAFAA VFVAGIIFII LSLTPFRKKL 120
  121 IEAIPENLKH GITAGIGLFI AFIGLRLTGI ITSHPTNLVA LGDLHQPSAV LALIGLAVTL 180
  181 VLMVLNVNGA MFFGMIATGL IAFFTGQLSF EQGFVSLPSL PDGLIIANPL SAFAEVFQHS 240
  241 LYAVVFSFLL VTIFDTTGTM IGVAQQAGLM KGNTMPRARE ALLSDSIATT IGAMFGTSPT 300
  301 SAYIESSSGV AAGGRTGLTS LTVAGLFVLA AFFGPLVSAV SGLSAITAPA LIIVGSLMMG 360
  361 SISHIKWNEL DEAFPAFLII LSMPLTSSIA TGIALGFISY PLMKIVKGKW RDVHPLVYLF 420
  421 AVLFFYQLAF LPH