YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89097080, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	41	0.52
Transmembrane Helix	42	64	0.90
Cytoplasmic	65	73	0.54
Transmembrane Helix	74	92	0.53
Non-Cytoplasmic	93	104	0.67
Transmembrane Helix	105	128	0.89
Cytoplasmic	129	164	0.94
Transmembrane Helix	165	185	0.91
Non-Cytoplasmic	186	199	0.87
Transmembrane Helix	200	221	0.92
Cytoplasmic	222	228	0.73
Transmembrane Helix	229	250	0.87
Non-Cytoplasmic	251	266	0.95
Transmembrane Helix	267	289	0.89
Cytoplasmic	290	309	0.88
Transmembrane Helix	310	332	0.92
Non-Cytoplasmic	333	352	0.89
Transmembrane Helix	353	374	0.88
Cytoplasmic	375	403	0.94
Transmembrane Helix	404	423	0.97
Non-Cytoplasmic	424	432	0.84
Transmembrane Helix	433	454	0.92
Cytoplasmic	455	460	0.86
Transmembrane Helix	461	479	0.83
Non-Cytoplasmic	480	486	0.71
Transmembrane Helix	487	507	0.89
Cytoplasmic	508	527	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVTGDGLER DDDFLAVCAD AGIDFAFYRY VFYGEENGKM MSTATLVTFI VYLAGMLAIG  60
   61 LFFYRMTSNL SDYVLGGRSL GPGVAALSAG ASDMSGWLLL GLPGAAYVSG FSAVWICIGL 120
  121 SAGAYLNWQF VARRLRAYTE VSRNSITIPD YLENRFRDHS KMLRVISAFV ILLFFTFYAS 180
  181 SGMVAGGKLF ENSFGLQYEA ALWIGAIVII SYTFLGGFLA VSWTDFVQGI LMFIALLIVP 240
  241 IAAISEVGGW SEAVDKVGSI KPDGLDVFAG TTAIGIISSM AWGLGYFGQP HIITRFMALR 300
  301 STRDVPMARL IGMVWMIAGL FGAIFTGFAG IAYFADTPLK DSETVFMDFS SLLFNPWISG 360
  361 ILLAAILSAI MSTIDSQLLV SSSAVAEDFY KAVFRKGAGE KELVWVGRIS VIVIALIAII 420
  421 LAMNPESSVL DLVSYAWGGF GAAFGPVIIL SLFWKRMTRN GALAGLISGA ATVVIWEKLK 480
  481 GGIFDLYEIV PGFLVCTAAI IIFSLASSSP DKEIEEEFEK AKASSFD