YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89088459, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	5	0.43
Transmembrane Helix	6	27	0.90
Non-Cytoplasmic	28	64	0.53
Transmembrane Helix	65	88	0.88
Cytoplasmic	89	124	0.95
Transmembrane Helix	125	149	0.85
Non-Cytoplasmic	150	159	0.78
Transmembrane Helix	160	181	0.90
Cytoplasmic	182	188	0.73
Transmembrane Helix	189	209	0.91
Non-Cytoplasmic	210	230	0.91
Transmembrane Helix	231	253	0.86
Cytoplasmic	254	270	0.91
Transmembrane Helix	271	292	0.93
Non-Cytoplasmic	293	317	0.87
Transmembrane Helix	318	339	0.81
Cytoplasmic	340	368	0.90
Transmembrane Helix	369	389	0.96
Non-Cytoplasmic	390	402	0.86
Transmembrane Helix	403	424	0.91
Cytoplasmic	425	430	0.87
Transmembrane Helix	431	450	0.91
Non-Cytoplasmic	451	458	0.89
Transmembrane Helix	459	480	0.90
Cytoplasmic	481	500	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METATLITFI VYLIGMLAIG LISYKLTSNL SDYVLGGRSL GPGVTALSAG ASDMSSWLLL  60
   61 GLPGLAYATG LDSIWMCVGL IIGAYLNWKF VASRLRAYTE VANDSITVPD FFENRFKDGS 120
  121 RLLRVISALV ILIFFTFYAS SGLVGGALLF QETFGMTYNT ALLIGAIVII SYTFLGGFLA 180
  181 VSWTDFFQGL LMFLALVIVP IVAFAKLGGW GETIDTVRSI DPSYLDPIDT MSGLGIVSLM 240
  241 AWGLGYFGQP HIITRFMAIR STKEIPKARF YGMSWMTISI IGAILVGLVG IPSFAENPLI 300
  301 QGDVDNSEKV FIFFADILFN PWVSGILLAA ILSAIMSTID SQLLVSSSAL AEDFYKGIIR 360
  361 KNASDKELVW VGRIGVIVIA LIAILLAYTG NPKNGGASIL DLVSYAWGGF GAAFGPVVLL 420
  421 SLYWKRMTRN GALAGMLTGA ITVVVWKQLT DKEIIPFELY EIVPGFFLAL LAIIIFSLIG 480
  481 NQPDKVIREE FEEAVESDRE