YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89073413, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTKHQTENK ASLTESSYRY QWQLFLVALA FFTRIPIPIS TPFSTERLNH ANRYFGVIGL  60
   61 IVGGICSLIY LIFILLFPPT IAIGIAMISS LLLTGAFHED GLADVFDGFG GGWTIESKLN 120
  121 IMKDSRLGTY GASALIMALG LKWVTLVSLA DINLYLPIYA FIVIQCISRI AAASLIFSYP 180
  181 YVRADQDSKV KPLANQQSLL DIGILLTTGI LILSILPLSL ALSCLITTVF IRQSCGYWFK 240
  241 RQLGGYTGDC LGATQQLAEI TGYLTLLTFA SHYHF

Type	Start	End	Confidence
Cytoplasmic	1	19	0.82
Transmembrane Helix	20	40	0.85
Non-Cytoplasmic	41	53	0.70
Transmembrane Helix	54	74	0.92
Cytoplasmic	75	80	0.51
Transmembrane Helix	81	102	0.70
Non-Cytoplasmic	103	126	0.65
Transmembrane Helix	127	146	0.91
Cytoplasmic	147	154	0.54
Transmembrane Helix	155	177	0.84
Non-Cytoplasmic	178	201	0.67
Transmembrane Helix	202	231	0.79
Cytoplasmic	232	275	0.62