YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89095940, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.96
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPTKKQKKR KWLQITAIAA VILAAAVGVY AYSVYHSLTS AVETMHQPIE REKSEKRQET  60
   61 VTLEKRDPFS VLMLGVDERD GDKGRSDTMI VLTVNPEKNS VKMLSIPRDT RTEIIGHGTT 120
  121 DKINHAYAFG GVPMAMDTVE NFLDIPIDYY IQINMEGFRD IVDSVGGITV NNDLDFDSGG 180
  181 YHFPEGTVTM DGKKALAFSR MRYEDPRGDF GRQLRQRMII QAVLKKGVSV SSLANYDEIF 240
  241 SALGKNVKTN LAFGEMVDIQ KHYKNAAKDI EQISIEGTGE RIDNIWYLMV SDEEKGRIQS 300
  301 EMKNHLSL

Type	Start	End	Confidence
Signal Peptide	1	31	0.95
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	308	0.99