YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89095776, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSNQFRKKA VAYITMVLIT IVTVGPFLIT LFIAAKSPGE GIYGSFLPEN PTFENFITAF  60
   61 DKANFGTYFL NTVIVTGLAI PFNLLFCSLA AYPLARMDFR GRSVVLALII STMMVPFQLY 120
  121 MAPLFQLAGE LGLRNTHAGL IVLQVSTAFG IFLMRQAYLR IPKDLEESAY LDGANRFKVW 180
  181 YLVVLPLVKP TLVTLAIFTF MGTWGDYLWP LLNSTDSTMY TLSIGLAQLS QNFDGANLKL 240
  241 ISAASILTTI PTLLIFIWLQ KYFISGATDG AVKG

Type	Start	End	Confidence
Cytoplasmic	1	10	0.97
Transmembrane Helix	11	35	0.91
Non-Cytoplasmic	36	68	0.96
Transmembrane Helix	69	92	0.85
Cytoplasmic	93	102	0.80
Transmembrane Helix	103	122	0.93
Non-Cytoplasmic	123	136	0.82
Transmembrane Helix	137	159	0.89
Cytoplasmic	160	178	0.98
Transmembrane Helix	179	201	0.93
Non-Cytoplasmic	202	239	0.80
Transmembrane Helix	240	259	0.94
Cytoplasmic	260	274	0.77