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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|89082125, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.87
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASQRIFKE RRHYNKWVAN QTLEDYALRF TAVGGRHMSI SKVGMTALGA TSFLALEGLA  60
   61 AAVTLSYGFV NTLWAMLAVC FVLFITGFPI AYHCAKNGLD IDLLTRGAGF GYLGSTITSL 120
  121 IYASFTFIFF AIEAAILASA LKALMGIPLF IGYIICAVAV IPIVTHGITA ISKFQLGTQF 180
  181 VWLLLQISAL VVVIGYESEK LVGWSEYTVP ELPQSAGFDL ALFGAAVSVL IALIAQIGEQ 240
  241 ADYLRFMPPK TRKNRKSWWF WVVLSGPGWV WVGLIKMLLG SFLAYLAITE LIPFEDATDP 300
  301 TYMYQRVFQD LTQSPALSLI LAAVMVILCQ MKINVTNAYA GSIAWSNFFS RLTHSHPGRV 360
  361 VWLVFNVAIA LLLMELGIYQ ALEAILGTFA ILALAWLGSL SADLLINRPL GFSPKQIEFK 420
  421 RAHLYDINPV GIGSMLISTI VGFTAFLGVF GEAAQHLCHF VTLLSCLICV PLIAILTKGR 480
  481 YYLARDAVDL SSYVGGEYDF GLIHPVSKST IKCGICENRF EHQDMTFCPA YQQPICSLCC 540
  541 SLDVRCLDAC KPKAGLAHSV LRNLYRYLPR RFVRGLYSRL GRFVVLVISA NSLLAGLLML 600
  601 IFNQIGASSA TESALLEKAL ITLFIVLFIA SGVIAWLFLL AHESRLTAQK ESNHQSAKLT 660
  661 REIDAHEQTD RELQEAKEQA ERANEAKSRY LTGISHELRT PLQSILGYAQ LLSEKEEVAS 720
  721 DQKRGLKIIH RSGQYLTDLI EGLLDISKIE AGRLDLFRNQ VNLPELIDQM VEMFRVQADK 780
  781 KSLVLNFTLD GRLPDYVMTD EKRLRQILIN LLSNAIKYTD KGKVDFHIRY RNQVAEFVVR 840
  841 DTGPGIEKEN LDRVFQPFER VRNSSNAHRP GTGLGLTIVK LLTEIMGGDL QVKSEIGTGS 900
  901 EFRVSLLLPW LDQSQAEDTS KSQILGYEGF QKTLLLADDD PILRGLLSDL LVPLGFNVIE 960
  961 AHDGENALEL LENNHPDLFL LDISMPGMSG LELAQELRRC EVKSPIIMLS ANVEDDSHKS1020
 1021 VYRKHYDDYL VKPVNNHQLL ERIGQWLDIK WIYRGEPIKR DDQLRSFDPV SAVHEENRTL1080
 1081 PIDHELLIEL KAYAEMGYQK GVTKSLIKIR DEQLLSDEVM GVLQRLSEGF QLEKLAQHIE1140
 1141 EGRV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle