YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89093660, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.77
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEQMIKSRA AIAWGPNQPL SIEEVDVMPP QAGEVLVRIV ATGVCHTDAF TLSGEDPEGI  60
   61 FPAILGHEGG GIVEAVGEGV TSLQVGDHVI PLYTPECGEC KFCKSGKTNL CQKIRETQGK 120
  121 GLMPDGTTRF YKDGEPIYHY MGCSTFSEYT VLPEISLARV NKEAPLEEVC LLGCGVTTGM 180
  181 GAVMNTAKVE EGATVAIFGL GGIGLSAVIG ATMAKASRIL AIDINDSKFE LAKQLGATDC 240
  241 INPKEFDKPI QEVIVEMTDG GVDYSFECIG NVDVMRSALE CCHKGWGESV IIGVAGAGQE 300
  301 ISTRPFQLVT GRVWRGTAFG GVKGRSELPE IVERYMAGEF KLNDFITHTM GLDKINEAFD 360
  361 LMHEGKSIRS VIHYDR

Type	Start	End	Confidence
Cytoplasmic	1	168	0.67
Transmembrane Helix	169	184	0.57
Non-Cytoplasmic	185	192	0.68
Transmembrane Helix	193	214	0.70
Cytoplasmic	215	376	0.63