YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89082043, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSLNQQTG GLSDNSETQI TRRQTAVYVY EAPVRLWHWV TVFSVIVLCV TGFFIGRPLP  60
   61 TMPGEAIDNY LMGYIRFAHF TAGYIVTIGF IGRIYWAFVG NSHSRELFLP KLFSGKFWKE 120
  121 VGHELRWYFF LERVPKKYVG HNPLAQLAMF FFFVIGMTFM IVTGFALYSE GMGHGSWSDQ 180
  181 LFGWIIPLFG QSQDVHTWHR LGMWFIIVFI MTHVYVAIRE DIMSRQSLIS TMVGGWRMFK 240
  241 DDRPD

Type	Start	End	Confidence
Cytoplasmic	1	35	0.97
Transmembrane Helix	36	56	0.94
Non-Cytoplasmic	57	76	0.87
Transmembrane Helix	77	97	0.94
Cytoplasmic	98	146	0.94
Transmembrane Helix	147	168	0.93
Non-Cytoplasmic	169	196	0.93
Transmembrane Helix	197	217	0.93
Cytoplasmic	218	245	0.95