YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89047620, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	27	0.53
Transmembrane Helix	28	47	0.89
Non-Cytoplasmic	48	54	0.47
Transmembrane Helix	55	78	0.71
Cytoplasmic	79	79	0.35
Transmembrane Helix	80	99	0.70
Non-Cytoplasmic	100	103	0.55
Transmembrane Helix	104	125	0.89
Cytoplasmic	126	131	0.71
Transmembrane Helix	132	151	0.84
Non-Cytoplasmic	152	173	0.85
Transmembrane Helix	174	196	0.92
Cytoplasmic	197	226	0.89
Transmembrane Helix	227	248	0.90
Non-Cytoplasmic	249	255	0.76
Transmembrane Helix	256	275	0.68
Cytoplasmic	276	280	0.56
Transmembrane Helix	281	301	0.78
Non-Cytoplasmic	302	305	0.51
Transmembrane Helix	306	322	0.47
Cytoplasmic	323	327	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTNTMNKPA EKNRQKWFSK EWLIEQKSLI ALLFLIVVVS FLNPNFFTVD NILNILRQTS  60
   61 VNAIIAVGMT LVILTAGIDL SVGSVLALCG AFAASMIALE VPVLIAVPTA LLAGALLGGI 120
  121 SGVIIAKGKV QAFIATLVTM TLLRGITMVY TDGRPISTGF TDTGDAFAWF GTGYALGIPV 180
  181 PVWLMVIVFA GVWYLLNHTR FGRYIYALGG NESAARLSGI NVDRVKIGVY AICGMLAALA 240
  241 GIIVTSRLSS AQPTAGMGYE LDAIAAVVLG GTSLMGGKGR IMGTLIGALI IGFLNNALNL 300
  301 LDVSSYYQMI AKAVVILLAV LVDNKNK