YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89049197, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQYDVIVAG GGMVGAATAL GLAKLGLDVA VLEGFAPRPF ANTQPMDLRV SAISPHSVAL  60
   61 LDRLGAWNEV LNMRLCPFKR LETWETPECR TRFNADDMGL EQLGYIVENR LLQLALWQQF 120
  121 DNIDNLTLYC PSKMVSTTPI ENGYIVELEN TQQLQCRLLI GADGANSQVR QQADIGITAW 180
  181 DYRQHCMLIN IETALPQQDI TWQQFTPAGP RSFLPLSGHQ GSLVWYDSPE RIRRLSHMTS 240
  241 GQLQTEISAV FPEELGEFSV VDHGSFPLTR RHAQTYYKPN VVLLGDAAHT INPLAGQGVN 300
  301 LGFKDVDVLL QEIEAAGEHW AESSVLDKYQ RRRRPDNLVM QTGMDFFYVA FSNNIAPLKF 360
  361 IRNAGLRLAD GAAGIKKQVL KYAMGL

Type	Start	End	Confidence
Signal Peptide	1	21	0.53
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	386	0.96