YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89074722, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPGEALTS ASYITHHLTN LSTDKLGLAS EGSFWAVNID SLIFSVLTGL AFLWLFRSVA  60
   61 KKASSGVPSK VQCFVEMVVE FVDTNVKDTF HGRNPLVAPL ALTIFCWILL MNIMDLVPID 120
  121 FIPYAAQSVG IPYMKVVPSA DVNITMAMAL GVFALMIYYS IKVKGLGGFA KELALHPFNH 180
  181 PIMIPFNLLL EVVSLLAKPI SLGMRLFGNM FAGEVVFILI AALMPWWAQW LGSVPWAIFH 240
  241 ILVITIQAFV FMMLTIVYLS QAHEDNH

Type	Start	End	Confidence
Non-Cytoplasmic	1	35	0.78
Transmembrane Helix	36	56	0.91
Cytoplasmic	57	95	0.80
Transmembrane Helix	96	119	0.81
Non-Cytoplasmic	120	139	0.71
Transmembrane Helix	140	161	0.89
Cytoplasmic	162	205	0.68
Transmembrane Helix	206	228	0.89
Non-Cytoplasmic	229	235	0.72
Transmembrane Helix	236	259	0.92
Cytoplasmic	260	267	0.76