YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89074536, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.89
Transmembrane Helix	16	36	0.90
Non-Cytoplasmic	37	67	0.89
Transmembrane Helix	68	88	0.90
Cytoplasmic	89	96	0.77
Transmembrane Helix	97	116	0.96
Non-Cytoplasmic	117	124	0.75
Transmembrane Helix	125	144	0.95
Cytoplasmic	145	152	0.85
Transmembrane Helix	153	174	0.94
Non-Cytoplasmic	175	194	0.96
Transmembrane Helix	195	216	0.88
Cytoplasmic	217	230	0.68
Transmembrane Helix	231	250	0.86
Non-Cytoplasmic	251	253	0.58
Transmembrane Helix	254	276	0.84
Cytoplasmic	277	283	0.81
Transmembrane Helix	284	306	0.89
Non-Cytoplasmic	307	311	0.88
Transmembrane Helix	312	332	0.93
Cytoplasmic	333	356	0.89
Transmembrane Helix	357	377	0.94
Non-Cytoplasmic	378	395	0.88
Transmembrane Helix	396	416	0.92
Cytoplasmic	417	428	0.77
Transmembrane Helix	429	448	0.96
Non-Cytoplasmic	449	453	0.76
Transmembrane Helix	454	474	0.92
Cytoplasmic	475	483	0.86
Transmembrane Helix	484	504	0.92
Non-Cytoplasmic	505	523	0.86
Transmembrane Helix	524	546	0.86
Cytoplasmic	547	551	0.60
Transmembrane Helix	552	567	0.54
Non-Cytoplasmic	568	573	0.43
Transmembrane Helix	574	598	0.89
Cytoplasmic	599	613	0.51
Transmembrane Helix	614	632	0.62
Non-Cytoplasmic	633	639	0.69
Transmembrane Helix	640	659	0.96
Cytoplasmic	660	662	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSKAINNKV KIKTSNIGLI VGVIITTFLV SYNAPYSLSF SEWISAIFSP NNEDYRQLIV  60
   61 HYSFLPRLSI ALVCGAGLAA AGSMMQYVLR NPLASPMTLG VAAGSELGVL IGTLFIPSQL 120
  121 QQFNFVFAFI GGLFATGLVF LLSARKGFSP FQLVLSGMVV SLFIGSLNMM LLLVNENQLT 180
  181 SVFIWGAGAL DQTDWSKVQL VTLLIGFPWI ALFLLIRPLS ILQLGESIAS AIGVRVIVLR 240
  241 VLALSLSVFI TSSIVSQVGI IGFVGLVAPV LAKMLGARKL FTRLVLSTFL GAAILLFADL 300
  301 CSMIFSNLEG NLLPTGAVTA LIGSPFLIWI IHRNTFPSSF RAEEQEEKTY VSYQFKNVVI 360
  361 VLACVGTIVF IGSLTIGKSA LGWLFTFSNV VYDLRLPRAL VAFFVGVALA LAGTIIQRIT 420
  421 RNGMASPEVL GVSAGSALAL VLVTLLGFHI SRTSQLLVCA IGALLVISVI GLTTRKEGFS 480
  481 PAKVLLTGIG LSAGLDAIIR IAMASGQDNV KGLLNWMSGS TYLASLSDFY LIFSVTGAVS 540
  541 ILLILCHRWL DIIALGDISA CSVGVPLKNA RKVLFLLAAI LTAVATIVMG PLSFIGLLAP 600
  601 HMARSLGQYQ SRRQLIVASI VGGNIMMLAD WAGRNIWFPW QFPAGLLASV IGGAYFIYLI 660
  661 RK