YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89074170, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKNKRLLVM AGGTGGHVFP GLAVAQKLQQ QGWEIRWLGT ADRMEADLVP KHGIEIDFIK  60
   61 VKGLRGQGVL RLLTAPFKIV GAILQARKYI KAWQPDVVLG MGGYVSGPGG VAAWLSGVPV 120
  121 VLHEQNAVAG LTNQWLSKIA AKVLQAFPGA FSNKEVVGNP VRHDMTVLPA PAERFAERTG 180
  181 PIRILVMGGS QGARILNQTM PEAAKVLGDS VTIWHQAGKG SQQSTEQAYN EQTTTPHKVT 240
  241 EFIDDVAAAY SWADLVVCRS GALTVSELSA AGVGAIFIPF MHKDRQQALN ADHLVQCGAA 300
  301 KMIEQMDLTV LGLAQEIQQL DRHTLEKMAC AASEAAIIDA DKRVANVIKS LVKN

Type	Start	End	Confidence
Signal Peptide	1	25	0.91
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	354	0.98