YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89073994, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSSLKKVWI TLWRPATKIS LGVLALGGFI AGVIFWGGFN TALEMTNTEK FCISCHSMSD  60
   61 TVYPELQETV HWSNHSGVRA TCPDCHVPHN WTDKIARKMQ ASKEVFGAIA GTIDTPAKFE 120
  121 AKRLELAQHE WKRFAANGSL ECKSCHNYDS MKWDEMSPRA QVQMKQAAAK DQSCLDCHKG 180
  181 IAHHLPADMA SSGGIVSELS AASHSTDYSK DDTYYSVQFL PLYEDEAKTK DGGSLEPASA 240
  241 VKVVAIKNDM LQIELSGWRK VKGFGRVINQ DFGMNIPTAA LSKNAAQSAD IVKGFEQKED 300
  301 DVTGLKWQQV TATLWVEKKN FVSDISTVWT AAKSAYNTNC SVCHTQPAEN HFDANTWPGM 360
  361 FNGMLAFVNF DTDSEAIVLK YLQNHSSDFS KAEH

Type	Start	End	Confidence
Cytoplasmic	1	18	0.89
Transmembrane Helix	19	39	0.89
Non-Cytoplasmic	40	394	0.99