YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89072731, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENNPFDSLM PPAMAKKAEE VGVYKATKHP LQSFFLAITA GVFISIAFVF YTTVTTGAGD  60
   61 MPWGMAKFVG ALAFSLGLIL VVICGGELFT SSVLTTVARA SNRITTGQLL KNWIVVYIGN 120
  121 FIGASFFVIC IWIAKQHLGD NGQWGITAMK IAQHKLHHTF GQAVVLGMLC NLMVCLSVWM 180
  181 TFSCRSATDK IMVMLLPVAM FVACGFEHCI ANMFMIPMGI VIHHFATPEF WTMTGVNPSE 240
  241 FADLTVNHFI MNNLIPVTIG NIIGGGFLVG LTYWVIHRRS ELKGNNQH

Type	Start	End	Confidence
Cytoplasmic	1	33	0.97
Transmembrane Helix	34	54	0.95
Non-Cytoplasmic	55	70	0.83
Transmembrane Helix	71	94	0.89
Cytoplasmic	95	112	0.89
Transmembrane Helix	113	135	0.94
Non-Cytoplasmic	136	158	0.95
Transmembrane Helix	159	182	0.88
Cytoplasmic	183	192	0.86
Transmembrane Helix	193	223	0.77
Non-Cytoplasmic	224	253	0.94
Transmembrane Helix	254	276	0.92
Cytoplasmic	277	288	0.97